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 | Acesso ao texto completo restrito à biblioteca da Biblioteca Rui Tendinha. Para informações adicionais entre em contato com biblioteca@incaper.es.gov.br. |
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Registro Completo |
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Biblioteca(s): |
Biblioteca Rui Tendinha. |
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Data corrente: |
24/06/2019 |
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Data da última atualização: |
24/06/2019 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PERON, F. N.; CALLONI, R.; VENTURA, J. A.; FERNANDES, P. M. B. |
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Afiliação: |
UFES; UFGRS; Jose Aires Ventura, Incaper; UFES. |
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Título: |
Bioinformatics approach to the study of the molecular behaviour of mealybug wilt of pineapple. |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
Acta Horticulturae, 1239, p. 177-184, 2019. |
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DOI: |
10.17660/ActaHortic.2019.1239.22 |
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Idioma: |
Inglês |
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Conteúdo: |
Mealybug wilt of pineapple (MWP) is a disease caused by the Pineapple mealybug wilt-associated virus (PMWaV) complex transmitted by Dysmicoccus brevipes and D. neobrevipes. MWP symptoms are characterized by root dessication, leaf wilting and consequent failure to produce a fruit. The molecular mechanisms involved in the pineapple-PMWaV interaction for MWP symptomatology are still unclear. In this work, mRNAs of asymptomatic and symptomatic pineapple plants were evaluated using Illumina RNA sequencing technology. From a total of 79 million reads per sample, 16,097 genes were identified using STAR aligner and HTseq for paired-end files. Differentially expressed genes (DEGs) between the evaluated groups were estimated using DESeq2 and edgeR, with an FDR cutoff of ≤0.05. A total of 207 DEGs were detected, with 61 upregulated and 146 downregulated in symptomatic plants infected by PMWaV-2. The methodologies improved by the assays presented in this article and the detected DEGs can substantiate further researches with pineapple and the MWP disease. |
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Palavras-Chave: |
Abacaxi. |
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Thesaurus NAL: |
Bioinformatics; DESeq2; EdgeR; Pineapple; PMWaV; STAR; Transcriptomic. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 01796naa a2200265 a 4500
001 1021431
005 2019-06-24
008 2019 bl uuuu u00u1 u #d
024 7 $a10.17660/ActaHortic.2019.1239.22$2DOI
100 1 $aPERON, F. N.
245 $aBioinformatics approach to the study of the molecular behaviour of mealybug wilt of pineapple.$h[electronic resource]
260 $c2019
520 $aMealybug wilt of pineapple (MWP) is a disease caused by the Pineapple mealybug wilt-associated virus (PMWaV) complex transmitted by Dysmicoccus brevipes and D. neobrevipes. MWP symptoms are characterized by root dessication, leaf wilting and consequent failure to produce a fruit. The molecular mechanisms involved in the pineapple-PMWaV interaction for MWP symptomatology are still unclear. In this work, mRNAs of asymptomatic and symptomatic pineapple plants were evaluated using Illumina RNA sequencing technology. From a total of 79 million reads per sample, 16,097 genes were identified using STAR aligner and HTseq for paired-end files. Differentially expressed genes (DEGs) between the evaluated groups were estimated using DESeq2 and edgeR, with an FDR cutoff of ≤0.05. A total of 207 DEGs were detected, with 61 upregulated and 146 downregulated in symptomatic plants infected by PMWaV-2. The methodologies improved by the assays presented in this article and the detected DEGs can substantiate further researches with pineapple and the MWP disease.
650 $aBioinformatics
650 $aDESeq2
650 $aEdgeR
650 $aPineapple
650 $aPMWaV
650 $aSTAR
650 $aTranscriptomic
653 $aAbacaxi
700 1 $aCALLONI, R.
700 1 $aVENTURA, J. A.
700 1 $aFERNANDES, P. M. B.
773 $tActa Horticulturae, 1239, p. 177-184, 2019.
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Registro original: |
Biblioteca Rui Tendinha (BRT) |
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Biblioteca |
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Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
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Registro Completo |
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Biblioteca(s): |
Biblioteca Rui Tendinha. |
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Data corrente: |
23/06/2017 |
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Data da última atualização: |
28/09/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
COSTA, A. F. da.; TEODORO, P. E.; BHERING, L. L.; FORNAZIER, M. J.; ANDRADE, J. de S.; MARTINS, D. dos S.; ZANÚNCIO JUNIOR, J. S. |
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Afiliação: |
Andrea Ferreira da Costa, Incaper; P. E. Teodoro, Universidade Federal de Viçosa; L. L. Bhering, Universidade Federal de Viçosa; Mauricio José Fornazier, Incaper; Josimar de Souza Andrade, Incaper; David dos Santos Martins, Incaper; José Salazar Zanuncio Junior, Incaper. |
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Título: |
Selection of strawberry cultivars with tolerance to Tetranychus urticae (Acari: Tetranychidae) and high yield under different managements. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
Genetics and Molecular Research, v. 16, p. 1-10, 2017. |
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DOI: |
http://dx.doi.org/10.4238/gmr16029599 |
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Idioma: |
Inglês |
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Conteúdo: |
Tetranychus urticae Koch (Acari: Tetranychidae) is considered the main pest of strawberry. Several factors can favor its development, among them the genotype susceptibility and cropping system. The aims of this study were to evaluate the agronomic performance of strawberry cultivars under different managements and to identify strawberry cultivars that meet tolerance to T. urticae and high fruit yield. Thirteen cultivars of strawberry (?Albion?, ?Aleluia?, ?Aromas?, ?Camarosa?, ?Camino Real?, ?Campinas?, ?Diamante?, ?Dover?, ?Festival?, ?Seascape?, ?Toyonoka?, ?Tudla?, and ?Ventana?) under three managements (open field, low tunnel, and high tunnel) were evaluated. The T. urticae attack to different cultivars was influenced by managements, being low tunnel the one that provided higher infestations in the most evaluated cultivars. ?Camarosa? was the cultivar with the lower incidence of pest and ?Dover? had the higher infestation. |
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Thesaurus NAL: |
Acari: Tetranychidae; Strawberry; Tetranychus urticae. |
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Categoria do assunto: |
-- |
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URL: |
http://biblioteca.incaper.es.gov.br/digital/bitstream/item/2718/1/BRT-Selection-of-strawberry-cultivars-with-tolerance-to-Tetranychus.pdf
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Marc: |
LEADER 01746naa a2200241 a 4500
001 1015459
005 2017-09-28
008 2017 bl uuuu u00u1 u #d
024 7 $ahttp://dx.doi.org/10.4238/gmr16029599$2DOI
100 1 $aCOSTA, A. F. da.
245 $aSelection of strawberry cultivars with tolerance to Tetranychus urticae (Acari$bTetranychidae) and high yield under different managements.$h[electronic resource]
260 $c2017
520 $aTetranychus urticae Koch (Acari: Tetranychidae) is considered the main pest of strawberry. Several factors can favor its development, among them the genotype susceptibility and cropping system. The aims of this study were to evaluate the agronomic performance of strawberry cultivars under different managements and to identify strawberry cultivars that meet tolerance to T. urticae and high fruit yield. Thirteen cultivars of strawberry (?Albion?, ?Aleluia?, ?Aromas?, ?Camarosa?, ?Camino Real?, ?Campinas?, ?Diamante?, ?Dover?, ?Festival?, ?Seascape?, ?Toyonoka?, ?Tudla?, and ?Ventana?) under three managements (open field, low tunnel, and high tunnel) were evaluated. The T. urticae attack to different cultivars was influenced by managements, being low tunnel the one that provided higher infestations in the most evaluated cultivars. ?Camarosa? was the cultivar with the lower incidence of pest and ?Dover? had the higher infestation.
650 $aAcari: Tetranychidae
650 $aStrawberry
650 $aTetranychus urticae
700 1 $aTEODORO, P. E.
700 1 $aBHERING, L. L.
700 1 $aFORNAZIER, M. J.
700 1 $aANDRADE, J. de S.
700 1 $aMARTINS, D. dos S.
700 1 $aZANÚNCIO JUNIOR, J. S.
773 $tGenetics and Molecular Research$gv. 16, p. 1-10, 2017.
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